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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rdh9, retinol dehydrogenase 9
Sequence ID:NM_153133
Entrez Gene ID:103142
Ensembl ID:ENSMUSG00000056148

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 D3|10

Chromosomal Position (from UCSC)

Chromosomal Position:10: 127776466 - 127792695

NM_153133 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1393127213460127213852
394652127225663127225921
653816127227244127227407
8172698127227871127229752

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9055930Full LengthBC141318retinol dehydrogenase 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_694773  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_153133 NP_694773 Q8K5C8 adh_short

Related Sequences

 
mRNAGenPeptSwissProt
BC056642 AAH56642 Q6PHA1
BC141318 AAI41319 Q8K5C8
AF372838 AAM21318 Q8K5C8
AB081322 BAC98304 Q76LB8
AK132181 BAE21017 Q3V1Y2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rdh9 NP_694773 M.musculus Rdh16 19683 Gene Info NP_033066 95
M.musculus Rdh19 216453 Gene Info NP_671755 90
M.musculus Rdh1 107605 Gene Info NP_536684 89
M.musculus BC089597 216454 Gene Info NP_663399 89
R.norvegicus Rdh2 299511   NP_954678 85

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)