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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Atg10, autophagy related 10
Sequence ID:NM_025770
Entrez Gene ID:66795
Ensembl ID:ENSMUSG00000021619

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 C3|13

Chromosomal Position (from UCSC)

Chromosomal Position:13: 90936601 - 91208434

NM_025770 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
18979107495391075849
89810139107619191076306
101411119107689791076994
111212099116217491162271
121013489118045491180592
134914449129382191293916
144515609134792291348037
156116099136354391363591

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5249268Full LengthBC023455autophagy-related 10 (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080046  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025770 NP_080046 Q8R1P4 Autophagy_C

Related Sequences

 
mRNAGenPeptSwissProt
BC023455 AAH23455 Q8R1P4
AK017355 BAB30705 Q8R1P4
AK077333 BAC36756 Q8R1P4
AB091691 BAC55163 Q8R1P4
AB079383 BAC77060 Q8R1P4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atg10 NP_080046 R.norvegicus Atg10 688555   NP_001102975 93
H.sapiens ATG10 83734 Gene Info NP_113670 82
A.thaliana ATG10 819941   NP_850533 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)