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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. H2-Aa, Histocompatibility 2, class II antigen A, alpha
Sequence ID:NM_010378
Entrez Gene ID:14960
Ensembl ID:ENSMUSG00000036594

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 18.65

Chromosomal Position (from UCSC)

Chromosomal Position:17: 34282917 - 34287697

NM_010378 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
162883441969534419967
2894633442009934420273
4647453442051934420800
7469943442123234421480
99510843442462634424715

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2609494Full LengthBC029620histocompatibility 2, class II antigen A, alpha
3669693Full LengthBC019721histocompatibility 2, class II antigen A, alpha
3670758Full LengthBC031711histocompatibility 2, class II antigen A, alpha
4023996Full LengthBC043925histocompatibility 2, class II antigen A, alpha

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034508  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010378 NP_034508 P14434 MHC_II_alpha
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
M11357 AAA39613 P01910
K01922 AAA39614 P14434
K01923 AAA39615 P04228
K01925 AAA39620 P04227
M11356 AAA39621 P14436
M11358 AAA39622 P14437
Q549Q3
K01926 AAA39623 P14438
M21931 AAA39636 P01910
AF065910 AAC17908 P14437
Q549Q3
AF065911 AAC17909 P14437
Q549Q3
AF119253 AAD31756 Q9TQ72
Q9TQ71
AF119254 AAD31757 Q9TQ72
Q9TQ71
BC019721 AAH19721 P14434
BC029620 AAH29620 Q8K2X0
BC031711 AAH31711 P14434
BC043925 AAH43925 Q860C1
AY452201 AAR19089 Q6SR48
AK170931 BAE42123 Q3TB90
AK171383 BAE42424 Q3TB90
V00832 CAA24215 P01910
X52643 CAA36865 P23150

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus H2-Aa NP_034508 R.norvegicus RT1-Ba 309621   NP_001008831 83
H.sapiens HLA-DQA1 3117 Gene Info NP_002113 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)