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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lmcd1, LIM and cysteine-rich domains 1
Sequence ID:NM_144799
Entrez Gene ID:30937
Ensembl ID:ENSMUSG00000057604

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 E3|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 112273757 - 112330422

NM_144799 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1215112223751112223965
216304112255042112255130
305560112260479112260734
561896112265569112265904
8971112112278656112278871
11131727112279801112280415

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5007525Full LengthBC019124LIM and cysteine-rich domains 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_659048  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_144799 NP_659048 Q3TVW6
Q8VEE1
LIM
PET

Related Sequences

 
mRNAGenPeptSwissProt
BC019124 AAH19124 Q3TVW6
Q8VEE1
AK075847 BAC36002 Q8BVZ6
AK159946 BAE35502 Q3TVW6
Q8VEE1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lmcd1 NP_659048 R.norvegicus Lmcd1 494021   NP_001008562 98
H.sapiens LMCD1 29995 Gene Info NP_055398 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)