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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Kdm4a, lysine (K)-specific demethylase 4A
Sequence ID:NM_001161823
NM_172382
Entrez Gene ID:230674
Ensembl ID:ENSMUSG00000033326

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D2.1|4 56.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 118138315 - 118180006

 Exon Info From UCSC:
NM_001161823
NM_172382

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4207552Full LengthBC028866jumonji domain containing 2A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_759014  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001161823 NP_001155295 Q8BW72  
NM_172382 NP_759014   PHD
JmjC
JmjN

Related Sequences

 
mRNAGenPeptSwissProt
BC028866 AAH28866 Q8BW72
AK054095 BAC35653 Q8BW72
AK129187 BAC97997 Q8BW72
AK136085 BAE22812 Q8BW72
AK145066 BAE26217 Q8BW72
AK145947 BAE26776 Q8BW72

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Kdm4a NP_001155295 R.norvegicus Kdm4a 313539   NP_001101436 98
H.sapiens KDM4A 9682 Gene Info NP_055478 94
C.elegans jmjd-2 175080   NP_496969 41

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)