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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lsp1, lymphocyte specific 1
Sequence ID:NM_001136071
NM_001271508
NM_001271509
NM_001271510
NM_001271523
NM_019391
Entrez Gene ID:16985
Ensembl ID:ENSMUSG00000018819

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 F5|7 69.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 142460863 - 142494603

 Exon Info From UCSC:
NM_001136071
NM_019391

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3488528Full LengthBC003796lymphocyte specific 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062264  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001136071 NP_001129543 P19973  
NM_001271508 NP_001258437    
NM_001271509 NP_001258438    
NM_001271510 NP_001258439    
NM_001271523 NP_001258452    
NM_019391 NP_062264   Caldesmon

Related Sequences

 
mRNAGenPeptSwissProt
M90316 AAA65108 P19973
S74179 AAB32257 P19973
M89956 AAB48537 P19973
BC003796 AAH03796 P19973
D49691 BAA08541 P19973
AK031587 BAC27463 P19973

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lsp1 NP_001129543 R.norvegicus Lsp1 361680   NP_001020591 90
H.sapiens LSP1 4046 Gene Info NP_002330 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)