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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Col15a1, collagen, type XV, alpha 1
Sequence ID:NM_009928
Entrez Gene ID:12819
Ensembl ID:ENSMUSG00000028339

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4|4 B1-B3

Chromosomal Position (from UCSC)

Chromosomal Position:4: 47208192 - 47313165

 Exon Info From UCSC:
NM_009928

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3482829IncompleteBC038484procollagen, type XV
3590829IncompleteBC025101procollagen, type XV
100063017BC156474collagen, type XV, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034058  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009928 NP_034058 O35206 Collagen
Laminin_G_2
Endostatin

Related Sequences

 
mRNAGenPeptSwissProt
AF011450 AAC53387 O35206
BC156474 AAI56475  
AK134030 BAE21987 O35206

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col15a1 NP_034058 R.norvegicus Col15a1 298069   XP_216399 92
H.sapiens COL15A1 1306 Gene Info NP_001846 78

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)