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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Smpd3, sphingomyelin phosphodiesterase 3, neutral
Sequence ID:NM_021491
Entrez Gene ID:58994
Ensembl ID:ENSMUSG00000031906

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8|8 D2

Chromosomal Position (from UCSC)

Chromosomal Position:8: 106255258 - 106265919

NM_021491 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12813108776447108779259
28142976108779504108779666
29773040108781282108781345
30413130108781485108781574
31313286108783519108783674
32873362108783763108783838
33634884108788502108790023
48854971108812032108812118
49725148108861711108861887

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5721118Full LengthBC043077sphingomyelin phosphodiesterase 3, neutral
6399438Full LengthBC046980sphingomyelin phosphodiesterase 3, neutral

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067466  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_021491 NP_067466 Q9JJY3 EC 3.1.4.12 Exo_endo_phos

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC043077 AAH43077 Q9JJY3 EC 3.1.4.12
BC046980 AAH46980 Q9JJY3 EC 3.1.4.12
AK019476 BAB31745 Q9JJY3 EC 3.1.4.12
AK139226 BAE23925 Q9JJY3 EC 3.1.4.12
AK140788 BAE24479 Q3US57  
AJ250461 CAB92970 Q9JJY3 EC 3.1.4.12

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Smpd3 NP_067466 R.norvegicus Smpd3 94338   NP_446057 98
H.sapiens SMPD3 55512 Gene Info NP_061137 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)