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Gene Info

Gene Information For:Mm. Ctsd, cathepsin D
Sequence ID:NM_009983
Entrez Gene ID:13033
Ensembl ID:ENSMUSG00000007891

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 F5|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 142379664 - 142380839

NM_009983 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
26848149561820149562642
849947149562737149562835
9481092149562930149563074
10931215149563237149563359
12161442149566670149566896
14431561149568496149568614
15621685149569322149569445
16861845149571363149571522
18461979149573641149573774

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5253319Full LengthBC057931cathepsin D
6413315Full LengthBC054758cathepsin D
4500905IncompleteBC019682cathepsin D

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034113  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009983 NP_034113 Q3UCD9
P18242
EC 3.4.23.5 Asp
A1_Propeptide

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC019682 AAH19682 Q8VCK2  
BC048900 AAH48900 Q05BF3  
BC054758 AAH54758 Q3UCD9
P18242
EC 3.4.23.5
BC057931 AAH57931 Q3UCD9
P18242
EC 3.4.23.5
AK089294 BAC40831 Q8C243  
AK150363 BAE29498 Q3UCW4  
AK150364 BAE29499 Q3UCD9
P18242
EC 3.4.23.5
AK150579 BAE29674 Q3UCD9
P18242
EC 3.4.23.5
AK150622 BAE29712 Q3UC89  
AK150636 BAE29725 Q3UC89  
AK150694 BAE29773 Q3UCD9
P18242
EC 3.4.23.5
AK150768 BAE29834 Q3UCD9
P18242
EC 3.4.23.5
AK150946 BAE29980 Q3UCD9
P18242
EC 3.4.23.5
AK151256 BAE30245 Q3UCD9
P18242
EC 3.4.23.5
AK151275 BAE30262 Q3UCD9
P18242
EC 3.4.23.5
AK151276 BAE30263 Q3UAQ1  
AK151374 BAE30346 Q3UCD9
P18242
EC 3.4.23.5
AK151829 BAE30724 Q3UCD9
P18242
EC 3.4.23.5
AK151962 BAE30833 Q3UCD9
P18242
EC 3.4.23.5
AK152036 BAE30895 Q3UCD9
P18242
EC 3.4.23.5
AK152045 BAE30902 Q3U8W5  
AK152168 BAE31001 Q3UCD9
P18242
EC 3.4.23.5
AK152187 BAE31018 Q3UCD9
P18242
EC 3.4.23.5
AK152188 BAE31019 Q3UCD9
P18242
EC 3.4.23.5
AK152406 BAE31193 Q3UCD9
P18242
EC 3.4.23.5
AK152458 BAE31236 Q3UCD9
P18242
EC 3.4.23.5
AK152567 BAE31319 Q3UCD9
P18242
EC 3.4.23.5
AK152578 BAE31329 Q3U7P0  
AK152593 BAE31342 Q3UCD9
P18242
EC 3.4.23.5
AK152638 BAE31380 Q3U7I9  
AK152680 BAE31412 Q3UCD9
P18242
EC 3.4.23.5
AK152828 BAE31529 Q3UCD9
P18242
EC 3.4.23.5
AK152881 BAE31566 Q3UCD9
P18242
EC 3.4.23.5
AK152892 BAE31575 Q3UCD9
P18242
EC 3.4.23.5
AK153191 BAE31791 Q3UCD9
P18242
EC 3.4.23.5
AK153291 BAE31874 Q3U651  
AK159097 BAE34813 Q3UCD9
P18242
EC 3.4.23.5
AK159209 BAE34900 Q3TXL5  
AK159440 BAE35086 Q3UCD9
P18242
EC 3.4.23.5
AK159512 BAE35144 Q3UCD9
P18242
EC 3.4.23.5
AK159580 BAE35200 Q3TWR6  
AK159642 BAE35255 Q3TWL1  
AK159743 BAE35336 Q3TWD0  
AK159896 BAE35462 Q3TJN3  
AK159970 BAE35523 Q3UCD9
P18242
EC 3.4.23.5
AK166864 BAE39078 Q3UCD9
P18242
EC 3.4.23.5
AK166938 BAE39131 Q3UCD9
P18242
EC 3.4.23.5
AK167143 BAE39288 Q3UCD9
P18242
EC 3.4.23.5
AK167366 BAE39462 Q3TJN3  
AK167750 BAE39786 Q3TIR0  
AK167867 BAE39883 Q3UCD9
P18242
EC 3.4.23.5
AK169139 BAE40918 Q3UCD9
P18242
EC 3.4.23.5
AK171195 BAE42305 Q3UCD9
P18242
EC 3.4.23.5
X52886 CAA37067 Q3UCD9
P18242
EC 3.4.23.5
X53337 CAA37423 Q3UCD9
P18242
EC 3.4.23.5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ctsd NP_034113 R.norvegicus Ctsd 171293   NP_599161 92
H.sapiens CTSD 1509 Gene Info NP_001900 82
A.gambiae AgaP_AGAP003277 1269179   XP_307784 59
D.melanogaster cathD 45268   NP_652013 57
C.elegans asp-4 181444   NP_510191 53
A.thaliana AT4G04460 825776   NP_192355 49
N.crassa NCU02273 3876039   XP_959917 49
S.cerevisiae PEP4 855949   NP_015171 47

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta