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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Syngr1, synaptogyrin 1
Sequence ID:NM_009303
NM_207708
Entrez Gene ID:20972
Ensembl ID:ENSMUSG00000022415

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 E1|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 80091351 - 80113441

 Exon Info From UCSC:
NM_009303
NM_207708

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8861750Full LengthBC138728synaptogyrin 1
8861751Full LengthBC138729synaptogyrin 1
6822704IncompleteBC048172synaptogyrin 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033329  NP_997591  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009303 NP_033329 Q3U6D7 MARVEL
NM_207708 NP_997591 O55100 MARVEL

Related Sequences

 
mRNAGenPeptSwissProt
BC138728 AAI38729 O55100
BC138729 AAI38730 O55100
AK002972 BAB22487 O55100
AK010442 BAB26943 O55100
Q3U6D7
AK044007 BAC31736 O55100
AK153096 BAE31717 Q3U6D7
AK153187 BAE31788 Q3U6D7
AK156134 BAE33600 Q3U6D7
AJ002306 CAA05323 O55100
Q3U6D7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Syngr1 NP_997591 R.norvegicus Syngr1 29205   NP_062039 99
H.sapiens SYNGR1 9145 Gene Info NP_004702 94
A.gambiae AgaP_AGAP011318 1270617   XP_309332 53
D.melanogaster synaptogyrin 36533   NP_610908 45
C.elegans sng-1 180995   NP_509239 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)