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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tcp1, t-complex protein 1
Sequence ID:NM_013686
Entrez Gene ID:21454
Ensembl ID:ENSMUSG00000068039

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17 A3-B|17 7.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 12916464 - 12925067

 Exon Info From UCSC:
NM_013686

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3599670Full LengthBC003809t-complex protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038714  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013686 NP_038714 P11983 Cpn60_TCP1

Related Sequences

 
mRNAGenPeptSwissProt
M20130 AAA40337 P11983
M12899 AAA40338 P11983
BC003809 AAH03809 P11983
D90344 BAA14356 P11983
AK149611 BAE28989 P11983
AK149755 BAE29063 P11983
AK151068 BAE30084 P11983
AK151445 BAE30407 P11983
AK152641 BAE31381 P11983
AK153430 BAE31988 P11983
AK165665 BAE38327 P11983
AK166828 BAE39052 P11983
AK166966 BAE39149 P11983
AK167529 BAE39599 P11983

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tcp1 NP_038714 R.norvegicus Tcp1 24818   NP_036802 98
H.sapiens TCP1 6950 Gene Info NP_110379 96
A.gambiae AgaP_AGAP004238 1274083   XP_313154 74
D.melanogaster T-cp1 42649   NP_732748 73
C.elegans cct-1 174318   NP_495722 68
A.thaliana TCP-1 821544   NP_188640 67
S.pombe cct1 2539691   NP_595949 66
N.crassa NCU04448 3872053   XP_955906 64
S.cerevisiae TCP1 851798   NP_010498 63
P.falciparum PF11_0331 810878   XP_001348002 59

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)