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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Smarca1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
Sequence ID:NM_053123
Entrez Gene ID:93761
Ensembl ID:ENSMUSG00000031099

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X|X A3.2

Chromosomal Position (from UCSC)

Chromosomal Position:X: 47809699 - 47892542

 Exon Info From UCSC:
NM_053123

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6406330Full LengthBC057115SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
4482032IncompleteBC016071SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_444353  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_053123 NP_444353 Q6PGB8 SNF2_N
Myb_DNA-binding
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProt
BC016071 AAH16071 Q05DE7
BC057115 AAH57115 Q6PGB8
AF325920 AAK52453 Q6PGB8
AK030741 BAC27109 Q6PGB8
AK035068 BAC28931 Q8BS67

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Smarca1 NP_444353 R.norvegicus Smarca1 317575   XP_229124 99
H.sapiens SMARCA1 6594 Gene Info NP_620604 96
A.gambiae AgaP_AGAP010700 1272459   XP_311417 75
D.melanogaster Iswi 36390   NP_523719 74
C.elegans isw-1 175944   NP_498468 65
S.cerevisiae ISW2 854480   NP_014948 53

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)