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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ptch1, patched homolog 1
Sequence ID:NM_008957
Entrez Gene ID:19206
Ensembl ID:ENSMUSG00000021466

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:13 B3|13 36.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:13: 63543175 - 63573166

 Exon Info From UCSC:
NM_008957

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100063270Full LengthBC157045patched homolog 1
100062393BC156082patched homolog 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032983  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008957 NP_032983 Q61115 Patched

Related Sequences

 
mRNAGenPeptSwissProt
U46155 AAC98798 Q61115
BC156082 AAI56083  
BC157045 AAI57046  
AB189450 BAD72767 Q5TLE8
AB189451 BAD72768 Q5TLE7
AB164615 BAD74156 Q5R252
AB164616 BAD74157 Q5R1U4
AB189441 BAD74189 Q5R1U4
AB189442 BAD74190 Q5R1U4
AK138524 BAE23693 Q3UUD4
AK163736 BAE37474 Q3TQB0
AK166138 BAE38592 Q3TM50
AB214501 BAE45301 Q3LG17

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ptch1 NP_032983 R.norvegicus Ptch1 89830   NP_446018 99
H.sapiens PTCH1 5727 Gene Info NP_000255 97
A.gambiae AgaP_AGAP011395 1278302   XP_317925 48
C.elegans ptc-1 174274   NP_495662 41
D.melanogaster ptc 35851   NP_523661 41
C.elegans ptc-3 173631   NP_494384 40
C.elegans ptc-2 191745   NP_495218 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta