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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ctsh, cathepsin H
Sequence ID:NM_007801
Entrez Gene ID:13036
Ensembl ID:ENSMUSG00000032359

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 E3.1|9 50.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 90054536 - 90076084

 Exon Info From UCSC:
NM_007801

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2647229Full LengthBC006878cathepsin H
6438156IncompleteBC080767cathepsin H

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031827  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_007801 NP_031827 P49935 EC 3.4.22.16 Peptidase_C1
Inhibitor_I29

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U06119 AAA82966 P49935 EC 3.4.22.16
BC006878 AAH06878 Q922Q7  
AK149949 BAE29188 P49935 EC 3.4.22.16
AK150583 BAE29677 P49935 EC 3.4.22.16
AK157376 BAE34071 P49935 EC 3.4.22.16
AK160026 BAE35569 P49935 EC 3.4.22.16
Y18464 CAA77182 P49935 EC 3.4.22.16

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ctsh NP_031827 R.norvegicus Ctsh 25425   NP_037071 93
H.sapiens CTSH 1512 Gene Info NP_004381 83
A.thaliana ALP 836158   NP_568921 53
A.thaliana AT3G45310 823669   NP_566880 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)