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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cldn5, claudin 5
Sequence ID:NM_013805
Entrez Gene ID:12741
Ensembl ID:ENSMUSG00000041378

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:16 A3|16 11.65 cM

Chromosomal Position (from UCSC)

Chromosomal Position:16: 18776855 - 18778259

NM_013805 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
114141877693918778352

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3488769Full LengthBC002016claudin 5
6819173Full LengthBC083341claudin 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038833  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013805 NP_038833 O54942 PMP22_Claudin

Related Sequences

 
mRNAGenPeptSwissProt
AF035814 AAB96653 O54942
U82758 AAC27545 O54942
AF087823 AAD09758 O54942
BC002016 AAH02016 O54942
BC083341 AAH83341 O54942
AK077282 BAC36728 O54942

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cldn5 NP_038833 R.norvegicus Cldn5 65131   NP_113889 99
H.sapiens CLDN5 7122 Gene Info NP_001124333 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)