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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Tubb4b, Tubulin, beta 4B class IVB
Sequence ID:NM_146116
Entrez Gene ID:227613
Ensembl ID:ENSMUSG00000036752

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 A3|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 25222165 - 25223208

NM_146116 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
112112507767725078887
121213222507945325079563
132314312507964325079751
143216002508005325080221

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3585500Full LengthBC005547tubulin, beta 2C
4221189Full LengthBC022919tubulin, beta 2C
5699674Full LengthBC083319tubulin, beta 2C

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_666228  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_146116 NP_666228 P68372 Tubulin
Tubulin_C

Related Sequences

 
mRNAGenPeptSwissProt
BC005547 AAH05547 P68372
BC022919 AAH22919 P68372
BC083319 AAH83319 P68372
AK002568 BAB22193 Q9DCR1
AK006924 BAB24792 Q9CVR0
AK146587 BAE27282 P68372
AK167022 BAE39195 P68372

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tubb4b NP_666228 H.sapiens TUBB4B 10383 Gene Info NP_006079 100
R.norvegicus Tubb4b 296554   NP_954525 100
A.gambiae AgaP_AGAP010929 1271023   XP_309765 97
D.melanogaster betaTub56D 37238   NP_523795 97
C.elegans tbb-4 181170   NP_509585 94
A.thaliana TUB1 843911   NP_177706 86
A.thaliana TUB5 838590   NP_564101 86
N.crassa NCU04054 3873840   XP_957669 85
S.pombe nda3 2540582   NP_596650 77
S.cerevisiae TUB2 850506   NP_116616 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)