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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc3a1, solute carrier family 3, member 1
Sequence ID:NM_009205
Entrez Gene ID:20532
Ensembl ID:ENSMUSG00000024131

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 E4|17 51.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 85028361 - 85032474

NM_009205 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15128542768685428197
5136928543178285431961
6938478543209885432252
8489738543650985436634
97410938544597885446097
109412188544818685448310
121914148545122185451416
141515828545905585459222
158316998546014285460258
170023058546297585463580

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4222972Full LengthBC013441solute carrier family 3, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033231  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009205 NP_033231 O55093 Alpha-amylase

Related Sequences

 
mRNAGenPeptSwissProt
BC013441 AAH13441 Q91WV7
D88533 BAA24427 O55093
AK052623 BAC35066 Q91WV7
AK132275 BAE21075 Q91WV7
AB009290 BAF80623 A8C1U5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc3a1 NP_033231 R.norvegicus Slc3a1 29484   NP_058912 91
H.sapiens SLC3A1 6519 Gene Info NP_000332 81
A.gambiae AgaP_AGAP008965 1279928   XP_319713 41
D.melanogaster CG14935 34598   NP_723693 38
D.melanogaster CG14934 34597   NP_609522 38
N.crassa NCU06523 3877943   XP_961795 34
C.elegans atgp-2 175125   NP_497043 32
C.elegans atgp-1 178504   NP_503064 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)