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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. C1qtnf5, C1q and tumor necrosis factor related protein 5
Sequence ID:NM_001040631
NM_001040632
NM_001190313
NM_001190319
NM_145613
Entrez Gene ID:235312
Ensembl ID:ENSMUSG00000079592

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A5.2|9 25.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 44101841 - 44109187

 Exon Info From UCSC:
NM_001040631
NM_001040632
NM_001190313
NM_001190319
NM_145613

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3978387Full LengthBC025174C1q and tumor necrosis factor related protein 5
5355789Full LengthBC023068C1q and tumor necrosis factor related protein 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_663588  NP_667337  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001040631 NP_001035721    
NM_001040632 NP_001035722    
NM_001190313 NP_001177242    
NM_001190314 NP_001177243    
NM_001190319 NP_001177248    
NM_145613 NP_663588 Q8K479
Q4ZJN4
C1q
Collagen
NM_147126 NP_667337 Q8K480 Ldl_recept_a
CUB
Fz

Related Sequences

 
mRNAGenPeptSwissProt
BC023068 AAH23068 Q8R002
BC025174 AAH25174 Q8R002
BC148451 AAI48452  
BC153043 AAI53044  
AF469650 AAM89216 Q8K480
AF469650 AAM89217 Q8K479
Q4ZJN4
DQ002398 AAY21930 Q8K479
Q4ZJN4
AK053629 BAC35452 Q8K480

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus C1qtnf5 NP_001035722 R.norvegicus C1qtnf5 315598   NP_001012123 98
H.sapiens C1QTNF5 114902 Gene Info NP_056460 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)