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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc23a1, solute carrier family 23 (nucleobase transporters), member 1
Sequence ID:NM_011397
Entrez Gene ID:20522
Ensembl ID:ENSMUSG00000024354

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18 B2|18 18.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:18: 35619404 - 35627137

 Exon Info From UCSC:
NM_011397

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4238222Full LengthBC013528solute carrier family 23 (nucleobase transporters), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035527  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011397 NP_035527 Q9Z2J0 Xan_ur_permease

Related Sequences

 
mRNAGenPeptSwissProt
AF058318 AAC78805 Q9Z2J0
BC013528 AAH13528 Q9Z2J0
AK085499 BAC39457 Q9Z2J0
AK143959 BAE25631 Q9Z2J0
AK165439 BAE38187 Q9Z2J0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc23a1 NP_035527 R.norvegicus Slc23a1 50621   NP_059011 97
H.sapiens SLC23A1 9963 Gene Info NP_005838 91
A.thaliana PDE135 817192   NP_180219 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta