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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Hdac5, histone deacetylase 5
Sequence ID:NM_001077696
NM_010412
Entrez Gene ID:15184
Ensembl ID:ENSMUSG00000008855

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 D|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 102195746 - 102224839

 Exon Info From UCSC:
NM_001077696
NM_010412

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5720438Full LengthBC060609histone deacetylase 5
4458013IncompleteBC023309histone deacetylase 5
5368726IncompleteBC058554histone deacetylase 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034542  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001077696 NP_001071164      
NM_010412 NP_034542 Q9Z2V6 EC 3.5.1.98 Hist_deacetyl

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF006602 AAD09834 Q9Z2V6 EC 3.5.1.98
AF207748 AAF31418 Q9Z2V6 EC 3.5.1.98
BC060609 AAH60609 Q6P9T4  
AK122325 BAC65607 Q80TW3  
AK146483 BAE27204 Q3UJF1  
AK155335 BAE33201 Q3U2E0  
AK161956 BAE36653 Q3TSM2  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Hdac5 NP_001071164 R.norvegicus Hdac5 84580   NP_445902 99
H.sapiens HDAC5 10014 Gene Info NP_001015053 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta