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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. H2-Eb1, histocompatibility 2, class II antigen E beta
Sequence ID:NM_010382
Entrez Gene ID:14969
Ensembl ID:ENSMUSG00000060586

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 B1|17 18.66 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 34305897 - 34316199

NM_010382 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11813444281134442991
1824513444653534446804
4527333445111434451395
7348443445198734452097
8458683445250034452523
86916693445281834453618

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130440Full LengthBC132163histocompatibility 2, class II antigen E beta
40130442Full LengthBC132165histocompatibility 2, class II antigen E beta
100069446Full LengthBC172638histocompatibility 2, class II antigen E beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034512  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_010382 NP_034512 P18468 MHC_II_beta
C1-set

Related Sequences

 
mRNAGenPeptSwissProt
M28591 AAA39589 Q31161
M36940 AAA39590 P04230
M36939 AAA39593 Q31163
K01145 AAA39594 Q31164
M28408 AAA39606 Q31171
M11355 AAA39644 P04231
M12826 AAA39645 Q31185
U28489 AAB17688 Q31103
U28490 AAB17689 Q31104
BC132163 AAI32164 Q3U1H1
BC132165 AAI32166 Q3U1H1
BC172638 AAI72638  
D90032 BAA14080 Q31124
D90275 BAA14319 Q31239
AK155968 BAE33527 Q3U1H1
P20040
AK160485 BAE35816 O78196
X00958 CAA25470 Q61857
X07239 CAA30228 Q61713
X52641 CAA36863 P18468
X52642 CAA36864 P18469

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus H2-Eb1 NP_034512 R.norvegicus RT1-Db1 294270   NP_001008884 81
H.sapiens HLA-DRB1 3123 Gene Info NP_002115 76

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)