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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Snip1, Smad nuclear interacting protein 1
Sequence ID:NM_175246
Entrez Gene ID:76793
Ensembl ID:ENSMUSG00000050213

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D2.2|4

Chromosomal Position (from UCSC)

Chromosomal Position:4: 125066692 - 125073265

NM_175246 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1260124743936124744195
261363124745333124745435
364947124748350124748933
9482327124749909124751288

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
949686Full LengthBC064067Smad nuclear interacting protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_780455  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_175246 NP_780455 Q8BIZ6 FHA

Related Sequences

 
mRNAGenPeptSwissProt
BC064067 AAH64067 Q8BIZ6
AK049254 BAC33638 Q8BIZ6
AK049318 BAC33680 Q8BIZ6
AK040571 BAE20582 Q8BIZ6
AK132768 BAE21347 Q8BIZ6
AK143801 BAE25543 Q8BIZ6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Snip1 NP_780455 R.norvegicus Snip1 313588   NP_001014091 95
H.sapiens SNIP1 79753 Gene Info NP_078976 86
C.elegans C32E8.5 171946   NP_491217 57
A.thaliana DDL 821601   NP_188691 50
D.melanogaster CG17168 3354996   NP_001015254 49
N.crassa NCU06883 3875402   XP_959230 42
P.falciparum PF13_0042 814021   XP_001349805 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)