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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Csdc2, Cold shock domain containing C2, RNA binding
Sequence ID:NM_145473
Entrez Gene ID:105859
Ensembl ID:ENSMUSG00000042109

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:15 E1|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 81936894 - 81950928

NM_145473 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12298176718881767416
2305318177706081777361
5326548177900381779125
65524898177953581781369

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4461170Full LengthBC016109cold shock domain containing C2, RNA binding

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_663448  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145473 NP_663448 Q91YQ3 CSD

Related Sequences

 
mRNAGenPeptSwissProt
BC016109 AAH16109 Q91YQ3
AK028916 BAC26194 Q91YQ3
AK132493 BAE21201 Q91YQ3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Csdc2 NP_663448 H.sapiens CSDC2 27254 Gene Info NP_055275 97
R.norvegicus Csdc2 266600   XP_345861 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)