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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Itga6, integrin alpha 6
Sequence ID:NM_008397
Entrez Gene ID:16403
Ensembl ID:ENSMUSG00000027111

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 C2-C3|2 38.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:2: 71846238 - 71858416

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6826609Full LengthBC058095integrin alpha 6
5036677IncompleteBC024571integrin alpha 6
5355083IncompleteBC023816integrin alpha 6
6826609IncompleteBC049132integrin alpha 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032423  

Protein Infomation

NM_008397 NP_032423 Q8CC06 Integrin_alpha

Related Sequences

BC049132 AAH49132 Q80ZI8
BC058095 AAH58095 Q6PEE8
AK034186 BAC28623 Q8CC06
AK045391 BAC32340 Q8BR82
AK083717 BAC39003 Q8BNH0
AK159653 BAE35264 Q3TWK2
X69902 CAA49527 Q61739

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Itga6 NP_032423 R.norvegicus Itga6 114517   XP_002729215 97
H.sapiens ITGA6 3655 Gene Info NP_001073286 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)