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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Smad1, SMAD family member 1
Sequence ID:NM_008539
Entrez Gene ID:17125
Ensembl ID:ENSMUSG00000031681

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 C2|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 79339358 - 79399428

NM_008539 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
8914828186229781863690
148317398186755281867808
174019618187348981873710
196220788187722881877344
207923368188011081880367
233729178189568281896262
291831338192315181923366

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6811514Full LengthBC058693MAD homolog 1 (Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032565  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008539 NP_032565 P70340 MH1
MH2

Related Sequences

 
mRNAGenPeptSwissProt
U74359 AAB18256 P70340
U58992 AAC52785 P70340
BC058693 AAH58693 P70340
AK017583 BAB30820 P70340
AK034045 BAC28558 Q8CC31
AK054104 BAC35658 P70340
AK084505 BAC39200 Q8C3Y6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Smad1 NP_032565 H.sapiens SMAD1 4086 Gene Info NP_005891 99
R.norvegicus Smad1 25671   NP_037262 98
A.gambiae AgaP_AGAP008551 1275428   XP_314661 80
D.melanogaster Mad 33529   NP_477017 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta