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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Syp, synaptophysin
Sequence ID:NM_009305
Entrez Gene ID:20977
Ensembl ID:ENSMUSG00000031144

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X A-D|X 1.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:X: 7638683 - 7651977

NM_009305 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
114972157057215853
15021572169837217048
21634072182227218346
34153972212267221424
54073172221337222324
732106272256827226012
1063248272289627230381

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4507116Full LengthBC014823synaptophysin
6623553IncompleteBC052354synaptophysin
40103057IncompleteBC115644synaptophysin
40103059IncompleteBC115645synaptophysin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033331  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009305 NP_033331 Q62277 MARVEL

Related Sequences

 
mRNAGenPeptSwissProt
BC014823 AAH14823 Q62277
BC115644 AAI15645 A4FUR8
BC115645 AAI15646 A4FUR8
AK043756 BAC31642 Q62277
X95818 CAA65084 Q62277

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Syp NP_033331 R.norvegicus Syp 24804   NP_036796 100
H.sapiens SYP 6855 Gene Info NP_003170 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)