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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Atg5, autophagy related 5
Sequence ID:NM_053069
Entrez Gene ID:11793
Ensembl ID:ENSMUSG00000038160

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:10 B2|10 26.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:10: 44286089 - 44363052

NM_053069 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12274398816343988389
2283934400583744006002
3945214400966844009795
5226004401440144014479
6017634402337244023534
7648584403926544039359
8599764406676244066879
97723524408272144084096

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3486093Full LengthBC002166autophagy-related 5 (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_444299  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_053069 NP_444299 Q99J83 APG5

Related Sequences

 
mRNAGenPeptSwissProt
BC002166 AAH02166 Q99J83
AB048349 BAB33383 Q99J83
AK008351 BAC25216 Q8CF05
AK028315 BAC25874 Q99J83

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atg5 NP_444299 H.sapiens ATG5 9474 Gene Info NP_004840 97
A.gambiae AgaP_AGAP010939 1271014   XP_309756 54
D.melanogaster Atg5 31666   NP_572390 50
C.elegans atg-5 171735   NP_490885 37
A.thaliana APG5 831594   NP_197231 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)