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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Tsr1, TSR1 20S rRNA accumulation
Sequence ID:NM_177325
Entrez Gene ID:104662
Ensembl ID:ENSMUSG00000038335

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B5|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 74898070 - 74904940

 Exon Info From UCSC:
NM_177325

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4014819Full LengthBC031531TSR1, 20S rRNA accumulation, homolog (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_796299  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001163311 NP_001156783      
NM_013761 NP_038789 Q9QZX7 EC 5.1.1.18
EC 4.3.1.18
EC 4.3.1.17
PALP
NM_177325 NP_796299 Q5SWD9   DUF663
AARP2CN

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF148321 AAF08701 Q9QZX7 EC 5.1.1.18
EC 4.3.1.18
EC 4.3.1.17
BC011164 AAH11164 Q9QZX7 EC 5.1.1.18
EC 4.3.1.18
EC 4.3.1.17
BC031531 AAH31531 Q5SWD9  
AK028034 BAC25712 Q9QZX7 EC 5.1.1.18
EC 4.3.1.18
EC 4.3.1.17
AK031687 BAC27514 Q9QZX7 EC 5.1.1.18
EC 4.3.1.18
EC 4.3.1.17
AK043738 BAC31637 Q9QZX7 EC 5.1.1.18
EC 4.3.1.18
EC 4.3.1.17
AK129350 BAC98160 Q5SWD9  
AB232340 BAE19920 Q9QZX7 EC 5.1.1.18
EC 4.3.1.18
EC 4.3.1.17
AB232341 BAE19921 Q9QZX7 EC 5.1.1.18
EC 4.3.1.18
EC 4.3.1.17
AB232342 BAE19922 Q9QZX7 EC 5.1.1.18
EC 4.3.1.18
EC 4.3.1.17
AB232343 BAE19923 Q9QZX7 EC 5.1.1.18
EC 4.3.1.18
EC 4.3.1.17
AK030545 BAE20453 Q5SWD9  
AK134365 BAE22117 Q5SWD9  
AK154063 BAE32349 Q5SWD9  
AK157122 BAE33968 Q9QZX7 EC 5.1.1.18
EC 4.3.1.18
EC 4.3.1.17
AK162686 BAE37023 Q5SWD9  
AK165662 BAE38324 Q5SWD9  
AK170096 BAE41561 Q9QZX7 EC 5.1.1.18
EC 4.3.1.18
EC 4.3.1.17
AB235396 BAE44529 Q9QZX7 EC 5.1.1.18
EC 4.3.1.18
EC 4.3.1.17

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tsr1 NP_796299 R.norvegicus LOC100360406 100360406   XP_002727820 95
H.sapiens TSR1 55720 Gene Info NP_060598 86
D.melanogaster CG7338 40360   NP_649304 47
A.gambiae AgaP_AGAP009438 1269222   XP_307850 44
C.elegans tag-151 173812   NP_494840 43
A.thaliana AT1G42440 840848   NP_564480 43
S.pombe SPAC23H4.15 2541779   NP_593391 35
N.crassa NCU01503 3873115   XP_956952 35
S.cerevisiae TSR1 851499   NP_010223 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)