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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ap3s2, adaptor-related protein complex 3, sigma 2 subunit
Sequence ID:NM_009682
Entrez Gene ID:11778
Ensembl ID:ENSMUSG00000063801

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, nervous, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, retina, skin, soft tissue, stem cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 D3|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 79877729 - 79920622

NM_009682 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2053078702021087025497
530854158702735187027458
541654878705472087054791
548855998706003287060143
560056918706090187060992
569258238706539487065525

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6853219Full LengthBC060236adaptor-related protein complex 3, sigma 2 subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033812  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009682 NP_033812 Q6PAL3 Clat_adaptor_s

Related Sequences

 
mRNAGenPeptSwissProt
U91933 AAD03780 Q8BSZ2
BC028319 AAH28319 Q8R2M1
BC060236 AAH60236 Q6PAL3
AK028372 BAC25912 Q8BSZ2
AK037336 BAC29788 Q8BSZ2
AK083911 BAC39056 Q8BNE3
AK150085 BAE29294 Q8BSZ2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ap3s2 NP_033812 H.sapiens AP3S2 10239 Gene Info NP_005820 100
R.norvegicus LOC683402 683402   NP_001108511 100
D.melanogaster or 43943   NP_536793 79
A.gambiae AgaP_AGAP007522 1269709   XP_308356 77
C.elegans aps-3 171691   NP_740780 75
A.thaliana AT3G50860 824250   NP_190655 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)