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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tmc1, transmembrane channel-like gene family 1
Sequence ID:NM_028953
Entrez Gene ID:13409
Ensembl ID:ENSMUSG00000024749

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19 B|19 15.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:19: 20784653 - 20954202

 Exon Info From UCSC:
NM_028953

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100015962BC152732transmembrane channel-like gene family 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_083229  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028953 NP_083229 Q8R4P5 TMC

Related Sequences

 
mRNAGenPeptSwissProt
BC152732 AAI52733  
AF417579 AAL86400 Q8R4P5
AY263155 AAP35263 Q8R4P5
AK033447 BAC28293 Q8CCC1
AK077146 BAC36642 Q8C5T3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tmc1 NP_083229 R.norvegicus Tmc1 361739   NP_001101991 100
H.sapiens TMC1 117531 Gene Info NP_619636 97

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)