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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. H1foo, H1 histone family, member O, oocyte-specific
Sequence ID:NM_138311
Entrez Gene ID:171506
Ensembl ID:ENSMUSG00000042279

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 E3|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 115944937 - 115950231

NM_138311 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1144115894956115895099
145404115897652115897911
405714115898621115898930
715770115899703115899758
7711114115899907115900250

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8860935Full LengthBC137916H1 histone family, member O, oocyte-specific

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_612184  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_138311 NP_612184 Q8VIK3 Linker_histone

Related Sequences

 
mRNAGenPeptSwissProt
AY007195 AAG01890 Q8VIK3
BC137916 AAI37917 Q8VIK3
AK135944 BAE22736 Q8VIK3
AK162137 BAE36747 Q8VIK3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus H1foo NP_612184 R.norvegicus H1foo 502875   NP_001102821 81
H.sapiens H1FOO 132243 Gene Info NP_722575 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)