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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ptchd1, patched domain containing 1
Sequence ID:NM_001093750
Entrez Gene ID:211612
Ensembl ID:ENSMUSG00000041552

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X F3|X

Chromosomal Position (from UCSC)

Chromosomal Position:X: 155573652 - 155623120

NM_001093750 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15460152004278152009737
54616121152020913152021573
61226489152057502152057869

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40095445Full LengthBC116312patched domain containing 1
40095446Full LengthBC116313patched domain containing 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001093750 NP_001087219 Q14B62  

Related Sequences

 
mRNAGenPeptSwissProt
BC116312 AAI16313 Q14B62
BC116313 AAI16314 Q14B62
AK036111 BAC29308 Q14B62
AK135103 BAE22423 Q3UR40
AK141827 BAE24848 Q3UR40

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ptchd1 NP_001087219 R.norvegicus Ptchd1 317517   XP_228985 100
H.sapiens PTCHD1 139411 Gene Info NP_775766 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)