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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Acer1, alkaline ceramidase 1
Sequence ID:NM_175731
Entrez Gene ID:171168
Ensembl ID:ENSMUSG00000045019

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 D|17

Chromosomal Position (from UCSC)

Chromosomal Position:17: 56955078 - 56982108

NM_175731 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
117585709291257094669
175918965709491857095055
189720345709773557097872
203521765709831957098460
217722915709854757098661
229224295712141157121548

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40142524Full LengthBC130254alkaline ceramidase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_783858  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_175731 NP_783858 Q8R4X1 EC 3.5.1.23 aPHC

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC130254 AAI30255 Q8R4X1 EC 3.5.1.23
AF347023 AAL83821 Q8R4X1 EC 3.5.1.23
AK028901 BAC26186 Q8R4X1 EC 3.5.1.23
AK075884 BAC36029 Q8R4X1 EC 3.5.1.23

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Acer1 NP_783858 R.norvegicus Acer1 301118   NP_001100345 92
H.sapiens ACER1 125981 Gene Info NP_597999 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)