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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pax7, paired box gene 7
Sequence ID:NM_011039
Entrez Gene ID:18509
Ensembl ID:ENSMUSG00000028736

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4 E1|4 69.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 139738080 - 139832968

NM_011039 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12822139293995139296816
28233069139304846139305092
30703272139335490139335692
32733438139336675139336840
34393638139340397139340596
36393767139384490139384618
37683897139385411139385540
38984133139386052139386287
41344275139388741139388882

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062729Full LengthBC156884paired box gene 7
100062368BC156072paired box gene 7

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035169  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011039 NP_035169 P47239 Homeobox
PAX

Related Sequences

 
mRNAGenPeptSwissProt
U20792 AAA64491 P47239
AF254422 AAG16663 P47239
BC156072 AAI56073  
BC156884 AAI56885  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pax7 NP_035169 R.norvegicus Pax7 500574   XP_575941 99
H.sapiens PAX7 5081 Gene Info NP_001128726 98
A.gambiae AgaP_AGAP010358 1272681   XP_559100 73
D.melanogaster gsb-n 38004   NP_523862 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)