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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Colec12, collectin sub-family member 12
Sequence ID:NM_130449
Entrez Gene ID:140792
Ensembl ID:ENSMUSG00000036103

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18 A1|18

Chromosomal Position (from UCSC)

Chromosomal Position:18: 9707676 - 9877992

NM_130449 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
111297076459707756
11316397209189720968
16428698402369840358
28738598467849846882
386143298481019849147
1433192198585439859031
1922205898598359859971
2059216898667419866850
2169231498747869874931
2315332298769859877992

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5326386Full LengthBC057936collectin sub-family member 12
6306240IncompleteBC048915collectin sub-family member 12

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_569716  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_130449 NP_569716 Q8K4Q8 Lectin_C
Collagen

Related Sequences

 
mRNAGenPeptSwissProt
BC057936 AAH57936 Q8K4Q8
AB038519 BAB82497 Q8K4Q8
AB078434 BAC05523 Q8K4Q8
AK042772 BAC31361 Q8K4Q8
AK158366 BAE34474 Q8K4Q8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Colec12 NP_569716 R.norvegicus Colec12 361289   NP_001020892 97
H.sapiens COLEC12 81035 Gene Info NP_569057 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)