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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pglyrp1, peptidoglycan recognition protein 1
Sequence ID:NM_009402
Entrez Gene ID:21946
Ensembl ID:ENSMUSG00000030413

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7|7 A3

Chromosomal Position (from UCSC)

Chromosomal Position:7: 18884689 - 18890438

NM_009402 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12841947003819470321
2854061947462619474747
4076811947551219475786

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3969014Full LengthBC005582peptidoglycan recognition protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033428  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009402 NP_033428 Q4FK86
O88593
Amidase_2

Related Sequences

 
mRNAGenPeptSwissProt
AF076482 AAC31821 Q4FK86
O88593
AF193843 AAF06335 Q4FK86
O88593
BC005582 AAH05582 Q4FK86
O88593
AK008335 BAB25611 Q4FK86
O88593
X86374 CAA60133 O88593
CT010165 CAJ18373 Q4FK86
O88593

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pglyrp1 NP_033428 R.norvegicus Pglyrp1 84387   NP_445825 85
H.sapiens PGLYRP1 8993 Gene Info NP_005082 70
D.melanogaster PGRP-SC1a 35859   NP_610407 43
D.melanogaster PGRP-SC1b 35861   NP_610409 43
D.melanogaster PGRP-SC2 35862   NP_610410 43
A.gambiae PGRPS2 1276948   XP_316360 41
A.gambiae PGRPS3 1276947   XP_316359 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta