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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Obfc1, Oligonucleotide/oligosaccharide-binding fold containing 1
Sequence ID:NM_175360
Entrez Gene ID:108689
Ensembl ID:ENSMUSG00000042694

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:19 D1|19

Chromosomal Position (from UCSC)

Chromosomal Position:19: 47501037 - 47508773

NM_175360 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
16704757553747576206
6717434758229547582367
7448664758482447584946
86710384758830047588471
103911624759058047590703
116313304759151647591683
133113994759917647599244
140014954760312647603221
149616714761068547610860
167218784761130347611509

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5012064Full LengthBC029548oligonucleotide/oligosaccharide-binding fold containing 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_780569  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_175360 NP_780569 Q8K2X3 tRNA_anti

Related Sequences

 
mRNAGenPeptSwissProt
BC029548 AAH29548 Q8K2X3
AK009962 BAC25278 Q8CEX6
AK075574 BAC35830 Q8K2X3
AK135228 BAE22465 Q3UXU8
AK146929 BAE27540 Q8K2X3
AK164386 BAE37766 Q8K2X3
AK166348 BAE38722 Q3TLS0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Obfc1 NP_780569 R.norvegicus Obfc1 294025   NP_001011943 88
H.sapiens OBFC1 79991 Gene Info NP_079204 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)