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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Atp6v1a, ATPase, H+ transporting, lysosomal V1 subunit A
Sequence ID:NM_007508
Entrez Gene ID:11964
Ensembl ID:ENSMUSG00000052459

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:16 B4|16

Chromosomal Position (from UCSC)

Chromosomal Position:16: 44097174 - 44138980

 Exon Info From UCSC:
NM_007508

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2651677Full LengthBC038392ATPase, H+ transporting, lysosomal V1 subunit A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031534  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_007508 NP_031534 P50516 EC 3.6.3.14 ATP-synt_ab
ATP-synt_ab_C
ATP-synt_ab_N

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC038392 AAH38392 P50516 EC 3.6.3.14
AK140873 BAE24506 P50516 EC 3.6.3.14
AK149833 BAE29112 P50516 EC 3.6.3.14
AK152785 BAE31494 P50516 EC 3.6.3.14
AK153403 BAE31963 P50516 EC 3.6.3.14
AK154869 BAE32890 P50516 EC 3.6.3.14
AK160792 BAE36015 P50516 EC 3.6.3.14
AK166857 BAE39074 P50516 EC 3.6.3.14
AK170721 BAE41978 P50516 EC 3.6.3.14

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atp6v1a NP_031534 R.norvegicus Atp6v1a 685232   NP_001101788 100
H.sapiens ATP6V1A 523 Gene Info NP_001681 98
A.gambiae VATA_ANOGA 1273824   XP_312843 85
D.melanogaster Vha68-2 45012   NP_652004 84
C.elegans vha-13 3564970   NP_506559 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)