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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ablim1, actin-binding LIM protein 1
Sequence ID:NM_001103177
NM_001103178
NM_178688
Entrez Gene ID:226251
Ensembl ID:ENSMUSG00000025085

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19 D2|19 53.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:19: 57037139 - 57216032

 Exon Info From UCSC:
NM_001103177
NM_001103178
NM_178688

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9055695Full LengthBC141083actin-binding LIM protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_848803  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001103177 NP_001096647    
NM_001103178 NP_001096648    
NM_178688 NP_848803 Q8K4G5 LIM
VHP

Related Sequences

 
mRNAGenPeptSwissProt
BC032216 AAH32216 Q8K278
BC141083 AAI41084 B9EIV0
AF404774 AAM73705 Q8K4G5
AF404775 AAM73706 Q8K4G5
AF404776 AAM73707 Q8K4G5
AK029371 BAC26424 Q8K4G5
AK122196 BAC65478 Q8K4G5
AK143907 BAE25594 Q3UP03
AK154082 BAE32362 Q3U4R9
AK171860 BAE42703 Q3TAG5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ablim1 NP_848803 H.sapiens ABLIM1 3983 Gene Info NP_002304 92
R.norvegicus Ablim1 307989   NP_001037859 89
D.melanogaster p24-2 318890   NP_001189204 53
D.melanogaster unc-115 41178   NP_731391 53
D.melanogaster CG31352 261629   NP_001163574 51
A.gambiae AgaP_AGAP005425 1276123   XP_315432 38
C.elegans unc-115 181227   NP_001024542 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)