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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Vps29, vacuolar protein sorting 29 (S. pombe)
Sequence ID:NM_019780
Entrez Gene ID:56433
Ensembl ID:ENSMUSG00000029462

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, t-cell, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 F|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 122360176 - 122362997

NM_019780 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
164122804421122804484
65256122810021122810212
257492122812044122812279
493975122812813122813295

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2645432Full LengthBC005663vacuolar protein sorting 29 (S. pombe)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062754  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_019780 NP_062754 Q9QZ88 EC 3.1.3.3 Metallophos

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF193794 AAF04595 Q9QZ88 EC 3.1.3.3
BC005663 AAH05663 Q9QZ88 EC 3.1.3.3
AK004103 BAB23170 Q9QZ88 EC 3.1.3.3
AK150330 BAE29472 Q9QZ88 EC 3.1.3.3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Vps29 NP_062754 H.sapiens VPS29 51699 Gene Info NP_476528 100
R.norvegicus Vps29 288666   NP_001099402 99
A.gambiae AgaP_AGAP002338 1273629   XP_312630 86
D.melanogaster CG4764 33295   NP_608575 84
A.thaliana MAG1 823935   NP_190365 65
C.elegans vps-29 176424   NP_001022988 60
S.cerevisiae VPS29 856403   NP_011876 50
N.crassa NCU01822 3872066   XP_955919 49
S.pombe vps29 2542802   NP_594307 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)