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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Strn4, Striatin, calmodulin binding protein 4
Sequence ID:NM_133789
NM_001039878
Entrez Gene ID:97387
Ensembl ID:ENSMUSG00000030374

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pooled tissue, retina, skin, spleen, stem cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A2|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 16815888 - 16840898

 Exon Info From UCSC:
NM_133789
NM_001039878

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6401782Full LengthBC080283striatin, calmodulin binding protein 4
3494615IncompleteBC004025striatin, calmodulin binding protein 4
30460660IncompleteBC066805striatin, calmodulin binding protein 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598550  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001039878 NP_001034967    
NM_133789 NP_598550 P58404 WD40
Striatin

Related Sequences

 
mRNAGenPeptSwissProt
BC004025 AAH04025 P58404
BC080283 AAH80283 P58404
AF414080 AAL07439 P58404
AK154615 BAE32715 Q3U3S0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Strn4 NP_598550 R.norvegicus Strn4 308392   NP_001100950 99
H.sapiens STRN4 29888 Gene Info NP_001034966 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)