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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Edem1, ER degradation enhancer, mannosidase alpha-like 1
Sequence ID:NM_138677
Entrez Gene ID:192193
Ensembl ID:ENSMUSG00000030104

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 E2|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 108828651 - 108859351

 Exon Info From UCSC:
NM_138677

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2654113Full LengthBC023237ER degradation enhancer, mannosidase alpha-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_619618  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_138677 NP_619618 Q925U4 Glyco_hydro_47

Related Sequences

 
mRNAGenPeptSwissProt
BC023237 AAH23237 Q925U4
AB042828 BAB55676 Q925U4
AK030943 BAC27190 Q8C0J7
AK037889 BAC29890 Q8BYV2
AK082920 BAC38688 Q925U4
AK129090 BAC97900 Q6ZQG3
AK135969 BAE22751 Q3UX12
AK151668 BAE30594 Q3U9S2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Edem1 NP_619618 R.norvegicus Edem1 297504   XP_238366 99
H.sapiens EDEM1 9695 Gene Info NP_055489 94
C.elegans alpha-mannosidase 177857   NP_501802 59
S.pombe mnl1 2541981   NP_594434 47
A.thaliana AT1G27520 839643   NP_564288 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta