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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Snrnp200, Small nuclear ribonucleoprotein 200 (U5)
Sequence ID:NM_177214
Entrez Gene ID:320632
Ensembl ID:ENSMUSG00000003660

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 F1|2 62.2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 127208398 - 127240450

 Exon Info From UCSC:
NM_177214

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6408607Full LengthBC063261small nuclear ribonucleoprotein 200 (U5)
3990584IncompleteBC055940small nuclear ribonucleoprotein 200 (U5)
4194292IncompleteBC030856activating signal cointegrator 1 complex subunit 3-like 1
5343501IncompleteBC023685activating signal cointegrator 1 complex subunit 3-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_796188  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_177214 NP_796188 Q6P4T2 DEAD
Helicase_C
Sec63

Related Sequences

 
mRNAGenPeptSwissProt
BC055940 AAH55940 Q7TMG2
BC063261 AAH63261 Q6P4T2
AK039567 BAC30388 Q8BYH6
AK173025 BAD32303 Q69ZZ3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Snrnp200 NP_796188 H.sapiens SNRNP200 23020 Gene Info NP_054733 100
R.norvegicus Ascc3l1 296126   NP_001032855 100
A.gambiae AgaP_AGAP001519 1281659   XP_321605 75
D.melanogaster CG5931 39737   NP_648818 75
C.elegans Y46G5A.4 174901   NP_496710 62
A.thaliana emb1507 838690   NP_001185050 59
A.thaliana AT2G42270 818828   NP_181756 57
N.crassa NCU02685 3881624   XP_965458 53
S.pombe brr2 2543676   NP_593346 50
S.cerevisiae BRR2 856919   NP_011099 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)