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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Clp1, CLP1, cleavage and polyadenylation factor I subunit
Sequence ID:NM_133840
Entrez Gene ID:98985
Ensembl ID:ENSMUSG00000027079

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2 D|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 84723123 - 84727276

NM_133840 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
110968456327884564373
109717248456568584566312
172518308456731984567424

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3497802Full LengthBC003237CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598601  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_133840 NP_598601 Q99LI9 EC 2.7.1.78 Clp1

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC003237 AAH03237 Q99LI9 EC 2.7.1.78
AK077647 BAC36924 Q99LI9 EC 2.7.1.78
AK145209 BAE26299 Q3ULZ9  
AK169709 BAE41321 Q3TEC7  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clp1 NP_598601 R.norvegicus Clp1 311166   NP_001009599 100
H.sapiens CLP1 10978 Gene Info NP_006822 99
A.gambiae CLP1_ANOGA 1269532   XP_308174 60
D.melanogaster cbc 36494   NP_610876 57
C.elegans F59A2.4 175442   NP_001040858 49
A.thaliana CLPS3 819626   NP_187119 43
S.pombe SPAC22H10.05c 2541907   NP_593741 35
N.crassa NCU06314 3878710   XP_962576 35
S.cerevisiae CLP1 854424   NP_014893 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)