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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Prdm9, PR domain containing 9
Sequence ID:NM_144809
Entrez Gene ID:213389
Ensembl ID:ENSMUSG00000051977

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 A2|17

Chromosomal Position (from UCSC)

Chromosomal Position:17: 15553234 - 15564340

NM_144809 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
222821568004315682323
228324761569031515690508
247725441569165115691718
254528161569205015692321
281729181569252915692630
291930751569426415694420
307631251569598615696035
312632331569937815699485
323433571569977715699900
335834601570018415700286

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4501059Full LengthBC049903PR domain containing 9
5365459Full LengthBC023014PR domain containing 9

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_144809 NP_659058    

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC012016 AAH12016 Q96EQ9 EC 2.1.1.43
BC023014 AAH23014 Q05CM8  
BC049903 AAH49903 Q96EQ9 EC 2.1.1.43
FJ212287 ACN24618    
HQ704390 ADU04843 F2Y0K5  
HQ704391 ADU04844 E9Q4V2  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prdm9 NP_659058 R.norvegicus Prdm9 365155   NP_001102373 93
H.sapiens PRDM9 56979 Gene Info NP_064612 74

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)