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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Clns1a, chloride channel, nucleotide-sensitive, 1A
Sequence ID:NM_023671
Entrez Gene ID:12729
Ensembl ID:ENSMUSG00000025439

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 E3|7 50.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 97696689 - 97718917

NM_023671 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1179104845200104845378
180316104854098104854234
317415104860209104860307
416523104861136104861243
524697104862416104862589
698786104864960104865048
7871447104866728104867388

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3967933Full LengthBC005575chloride channel, nucleotide-sensitive, 1A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_076160  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_023671 NP_076160 Q923F1 ICln_channel

Related Sequences

 
mRNAGenPeptSwissProt
U53455 AAB03317 Q61189
BC005575 AAH05575 Q923F1
AK031877 BAC27588 Q923F1
AK169259 BAE41022 Q923F1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Clns1a NP_076160 R.norvegicus Clns1a 65160   NP_113907 98
H.sapiens CLNS1A 1207 Gene Info NP_001284 91
C.elegans icl-1 177730   NP_001021287 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)