Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Chp1, calcineurin-like EF hand protein 1
Sequence ID:NM_019769
Entrez Gene ID:56398
Ensembl ID:ENSMUSG00000014077

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 E5|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 119547795 - 119585299

NM_019769 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1211119373442119373652
212284119386466119386538
285365119392385119392465
366493119397503119397630
494555119406430119406491
556678119410265119410387
6792594119410842119412757

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5720240Full LengthBC054733RIKEN cDNA 1500003O03 gene
30030991Full LengthBC064784RIKEN cDNA 1500003O03 gene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062743  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019769 NP_062743 P61022 efhand

Related Sequences

 
mRNAGenPeptSwissProt
BC054733 AAH54733 P61022
BC064784 AAH64784 P61022
AB025217 BAA84688 P61022
AK005067 BAB23791 P61022
AK045920 BAC32532 P61022
AK156588 BAE33769 P61022
AK166219 BAE38637 P61022
AK167179 BAE39314 P61022
AK167720 BAE39762 P61022
AK168284 BAE40230 P61022
AK169146 BAE40925 P61022

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus 1500003O03Rik NP_062743 R.norvegicus Chp 64152   NP_077053 100
H.sapiens CHP 11261 Gene Info NP_009167 99
A.gambiae AgaP_AGAP001760 1281415   XP_321323 63
D.melanogaster elm 40695   NP_649568 63
C.elegans ZK856.8 179415   NP_505623 60
C.elegans F59D6.7 186617   NP_503830 56
A.thaliana AT3G18430 821372   NP_566610 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)