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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Prkcsh, Protein kinase C substrate 80K-H
Sequence ID:NM_008925
Entrez Gene ID:19089
Ensembl ID:ENSMUSG00000003402

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A3|9 6.0

Chromosomal Position (from UCSC)

Chromosomal Position:9: 22005567 - 22009245

 Exon Info From UCSC:
NM_008925

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4008182Full LengthBC009816protein kinase C substrate 80K-H

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032951  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008925 NP_032951 O08795
Q3U518
efhand
PRKCSH

Related Sequences

 
mRNAGenPeptSwissProt
U92794 AAC53183 O08795
Q3U518
BC009816 AAH09816 O08795
AK137661 BAE23450 O08795
Q3U518
AK153931 BAE32262 O08795
Q3U518
AK159705 BAE35304 Q3TWG2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prkcsh NP_032951 R.norvegicus Prkcsh 300445   NP_001100276 96
H.sapiens PRKCSH 5589 Gene Info NP_001001329 86
A.gambiae AgaP_AGAP004609 1275924   XP_315213 43
S.pombe SPCC825.02 2538725   NP_588052 42
D.melanogaster CG6453 35056   NP_609844 41
C.elegans ZK1307.8 174515   NP_496073 38
A.thaliana PSL4 835736   NP_568840 34
N.crassa NCU05606 3876683   XP_960568 34

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)