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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Prelp, proline arginine-rich end leucine-rich repeat
Sequence ID:NM_054077
Entrez Gene ID:116847
Ensembl ID:ENSMUSG00000041577

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1 E4|1 74.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:1: 133910313 - 133911460

NM_054077 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
42478135806883135809357
24793455135811021135811997
34563602135817831135817977

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4165772Full LengthBC019775proline arginine-rich end leucine-rich repeat

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_473418  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_054077 NP_473418 Q8CAZ9
Q9JK53
LRR_1
LRRNT

Related Sequences

 
mRNAGenPeptSwissProt
BC019775 AAH19775 Q543S0
Q9JK53
AK037150 BAC29722 Q8CAZ9
AK047480 BAC33072 Q543S0
Q9JK53

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prelp NP_473418 R.norvegicus Prelp 84400   NP_445837 96
H.sapiens PRELP 5549 Gene Info NP_958505 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)