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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Acta2, actin, alpha 2, smooth muscle, aorta
Sequence ID:NM_007392
Entrez Gene ID:11475
Ensembl ID:ENSMUSG00000035783

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19|19 C3

Chromosomal Position (from UCSC)

Chromosomal Position:19: 34241505 - 34252498

NM_007392 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
17203431558034316299
7219023431780634317987
90310943431940134319592
109512563432056734320728
125713413432114134321225
134214523432291334323023
145315813432621934326347
158217333432691434327065
173417803432977934329825

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30054569Full LengthBC064800actin, alpha 2, smooth muscle, aorta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031418  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007392 NP_031418 P62737 Actin

Related Sequences

 
mRNAGenPeptSwissProt
BC064800 AAH64800 P62737
AK017374 BAB30715 P62737
AK002886 BAC25011 Q8CF71
AK156331 BAE33678 Q3U122
X13297 CAA31659 P62737

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Acta2 NP_031418 H.sapiens ACTA2 59 Gene Info NP_001135417 100
A.gambiae AgaP_AGAP011516 1275974   XP_315269 93
D.melanogaster Act88F 41885   NP_524367 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)